Similar HOG based on pairwise relations to

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0748264 with 13 members (protein phosphatase Mg2+/Mn2+ dependent 1D)

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria /

... /

Eutheria / Boreoeutheria / Euarchontoglires /

Glires /

Completeness score: 0.87

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This HOG has 21 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0748264	989	116	protein phosphatase Mg2+/Mn2+ dependent 1D
2	HOG:E0748264.2b	275	23	protein phosphatase Mg2+/Mn2+ dependent 1D
3	HOG:E0702244.2b.4a	21	3	protein phosphatase Mg2+/Mn2+ dependent
4	HOG:E0748264.1b	13	1	protein phosphatase Mg2+/Mn2+ dependent 1D
5	HOG:E0748264.1a	13	1	protein phosphatase Mg2+/Mn2+ dependent 1D
6	HOG:E0702244.1b	9	1	protein phosphatase Mg2+/Mn2+ dependent
7	HOG:E0702244	9	56	protein phosphatase Mg2+/Mn2+ dependent
8	HOG:E0696323	8	34	protein phosphatase Mg2+/Mn2+ dependent 1Db
9	HOG:E0702244.2b	6	10	protein phosphatase Mg2+/Mn2+ dependent
10	HOG:E0311923	6	5	Protein phosphatase 2C and cyclic
11	HOG:E0702244.2b.5b	3	2	protein phosphatase Mg2+/Mn2+ dependent
12	HOG:E0702244.2a.1b	3	34	protein phosphatase Mg2+/Mn2+ dependent
13	HOG:E0735802	2	4	-
14	HOG:E0702244.2b.4b	2	2	protein phosphatase Mg2+/Mn2+ dependent
15	HOG:E0702244.2a.1a	2	2	protein phosphatase Mg2+/Mn2+ dependent
16	HOG:E0748264.2a	1	1	protein phosphatase Mg2+/Mn2+ dependent 1D
17	HOG:E0702244.2a.3a	1	2	protein phosphatase Mg2+/Mn2+ dependent
18	HOG:E0702244.2a.2d	1	1	protein phosphatase Mg2+/Mn2+ dependent
19	HOG:E0702244.2a.2c	1	1	protein phosphatase Mg2+/Mn2+ dependent
20	HOG:E0702244.2a.2b	1	1	protein phosphatase Mg2+/Mn2+ dependent
21	HOG:E0702244.2a.2a	1	1	protein phosphatase Mg2+/Mn2+ dependent

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